SNP Profiles matching SPA 9 [COL]

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 Key

 1234567891011121314
_Input profile
CCTTGGCCCTCCAGACGTCGCTTTGGAG
1._RUQ_233
CCCTGGCCCTCCAGACGTCGCTTTGGAG
2._SPA_9_[COL]
AC__CCCT_AGACGTCG_TTGG_
3._SPA_9_[COL]
AC__CCCT_AGACGTCG_TTGG_
4._GC-01-099-5-16
AC_GGCCCTCGAGACGTCGCTTTGGAG
5._GC-01-099-5-16
AC_GGCCCTCGAGACGTCGCTTTGGAG
6._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
7._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
8._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
9._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
10._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
11._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
12._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
13._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
14._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
15._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
16._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
17._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
18._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
19._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
20._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
21._SPA_9_[COL]
ACCT_CCCT_AGACGTCG_TTGG_
22._MO_20
ACCT_CCCT_AGACGTCG_TTGG_
23._GC-01-121-6-18
ACCTGGCCCTCGAGACGTCGCTTTGGAG
24._GC-01-121-6-18
ACCTGGCCCTCGAGACGTCGCTTTGGAG
25._GC-01-121-6-18
ACCTGGCCCTCGAGACGTCGCTTTGGAG
26._GC-01-121-6-18
ACCTGGCCCTCGAGACGTCGCTTTGGAG
27._GC-01-121-6-18
ACCTGGCCCTCGAGACGTCGCTTTGGAG
28._GC-08-167-4-10
ACCTGGCCCTCGAGACGTCGCTTTGGAG
29._GC-08-167-4-10
ACCTGGCCCTCGAGACGTCGCTTTGGAG
30._GC-08-167-4-10
ACCTGGCCCTCGAGACGTCGCTTTGGAG
31._GC-08-167-4-10
ACCTGGCCCTCGAGACGTCGCTTTGGAG
32._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
33._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
34._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
35._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
36._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
37._GC-01-099-5-16
ACCTGGCCCTCGAGACGTCGCTTTGGAG
38._GC-01-121-6-18
ACCTGGCCCTCGAGACGTCGCTTTGGAG
39._RUQ_235
ACCT_CCCT_AGACGTCG_TTGG_
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_Input profile
CCCGCGAACCGTAGATGTCTCTTTCCAA
1._RUQ_233
CCCGCGAACCGTAGATGTCTCTTTCCAA
2._SPA_9_[COL]
_CG_AA____GT__TTCCAA
3._SPA_9_[COL]
_CG_AA____GT__TTCCAA
4._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
5._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
6._MO_20
_CG_AA____GT__TTCCAA
7._MO_20
_CG_AA____GT__TTCCAA
8._MO_20
_CG_AA____GT__TTCCAA
9._MO_20
_CG_AA____GT__TTCCAA
10._MO_20
_CG_AA____GT__TTCCAA
11._MO_20
_CG_AA____GT__TTCCAA
12._MO_20
_CG_AA____GT__TTCCAA
13._MO_20
_CG_AA____GT__TTCCAA
14._MO_20
_CG_AA____GT__TTCCAA
15._MO_20
_CG_AA____GT__TTCCAA
16._SPA_9_[COL]
_CG_AA____GT__TTCCAA
17._SPA_9_[COL]
_CG_AA____GT__TTCCAA
18._SPA_9_[COL]
_CG_AA____GT__TTCCAA
19._SPA_9_[COL]
_CG_AA____GT__TTCCAA
20._SPA_9_[COL]
_CG_AA____GT__TTCCAA
21._SPA_9_[COL]
_CG_AA____GT__TTCCAA
22._MO_20
_CG_AA____GT__TTCCAA
23._GC-01-121-6-18
CCCGCGAACCGTAGATGTTTCTTTCCAA
24._GC-01-121-6-18
CCCGCGAACCGTAGATGTTTCTTTCCAA
25._GC-01-121-6-18
CCCGCGAACCGTAGATGTTTCTTTCCAA
26._GC-01-121-6-18
CCCGCGAACCGTAGATGTTTCTTTCCAA
27._GC-01-121-6-18
CCCGCGAACCGTAGATGTTTCTTTCCAA
28._GC-08-167-4-10
CCCGCGAACCGTAGATGTTTCTTTCCAA
29._GC-08-167-4-10
CCCGCGAACCGTAGATGTTTCTTTCCAA
30._GC-08-167-4-10
CCCGCGAACCGTAGATGTTTCTTTCCAA
31._GC-08-167-4-10
CCCGCGAACCGTAGATGTTTCTTTCCAA
32._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
33._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
34._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
35._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
36._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
37._GC-01-099-5-16
CCCGCGAACCGTAGATGTTTCTTTCCAA
38._GC-01-121-6-18
CCCGCGAACCGTAGATGTTT_TTCCAA
39._RUQ_235
_CG_AA____GT__TTCCAG

Input profile: SPA_9_[COL] RUQ_235

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._RUQ_233 RUQ_233

98.2 %
28 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._SPA_9_[COL]

96.7 %
15 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 4
 Dapeng Zhang, 2016

3._SPA_9_[COL]

96.7 %
15 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 9 > FP
 Dapeng Zhang, 2016

4._SPA_9_[COL] GC-01-099-5-16

94.4 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

5._SPA_9_[COL] GC-01-099-5-16

94.4 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

6._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 4
 Dapeng Zhang, 2016

7._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 3
 Dapeng Zhang, 2016

8._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 2
 Dapeng Zhang, 2016

9._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8410 1
 Dapeng Zhang, 2016

10._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 4 > FP
 Dapeng Zhang, 2016

11._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 2 > FP
 Dapeng Zhang, 2016

12._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 10 > F
 Dapeng Zhang, 2016

13._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 1 > FP
 Dapeng Zhang, 2016

14._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 11
 Dapeng Zhang, 2016

15._MO_20

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1618 9
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

16._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

17._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 3
 Dapeng Zhang, 2016

18._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 5
 Dapeng Zhang, 2016

19._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 1 > FP
 Dapeng Zhang, 2016

20._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 14 > F
 Dapeng Zhang, 2016

21._SPA_9_[COL]

93.8 %
16 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1516 6 > FP
 Dapeng Zhang, 2016

22._MO_20

93.8 %
16 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B D238 T2
 Dapeng Zhang, 2016

23._MO_20 GC-01-121-6-18

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

24._MO_20 GC-01-121-6-18

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP3
 Mars, 2018

25._MO_20 GC-01-121-6-18

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

26._MO_20 GC-01-121-6-18

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

27._MO_20 GC-01-121-6-18

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

28._MO_20 GC-08-167-4-10

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

29._MO_20 GC-08-167-4-10

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

30._MO_20 GC-08-167-4-10

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

31._MO_20 GC-08-167-4-10

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

32._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

33._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

35._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

37._SPA_9_[COL] GC-01-099-5-16

92.9 %
28 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

38._MO_20 GC-01-121-6-18

92.6 %
27 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

39._SPA_9_[COL] RUQ_235

90.6 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP144 2TcSNP151 3TcSNP174 4TcSNP226 5TcSNP242
6TcSNP448 7TcSNP469 8TcSNP529 9TcSNP560 10TcSNP577
11TcSNP602 12TcSNP619 13TcSNP723 14TcSNP731 15TcSNP823
16TcSNP872 17TcSNP878 18TcSNP998 19TcSNP999 20TcSNP1063
21TcSNP1111 22TcSNP1126 23TcSNP1253 24TcSNP1309 25TcSNP1439
26TcSNP1442 27TcSNP1458 28TcSNP1484